Organized access to atomic structures of the ribosome.

- we implement standard nomenclatures¹ ² ³ for polymer chains (RNA and proteins) across all structures. - provide structural landmarks: PTC, exit tunnel geometries, ligands & small molecules. - provide integrated tools for visualization, structural alignment, ligand prediction.

API is available at api.ribosome.xyz for programmatic access to the data.

RiboXYZ: a comprehensive database for visualizing and analyzing ribosome structures

Nucleic Acids Research, Volume 51, Issue D1, 6 January 2023

Data

1864 Atomic Structures

Last Update: 2024.06.14

Added:8Y0U,8Y0W,8Y0X,...

0 Polymer Classes

(103058 Proteins | 9041 RNA)

Unique Ligands

( in Drugbank)

Tools

Visualization (WIP)3D Superposition (WIP)Ligands & Small Molecules Landmarks(WIP)

Acknowledgement

We kindly thank the following platforms and packages for making their work freely available or supporting us otherwise.

Developed by A. Kushner and K. Dao Duc

@article{kushner2023riboxyz,
  title={RiboXYZ: a comprehensive database for visualizing and analyzing ribosome structures},
  author={Kushner, Artem and Petrov, Anton S and Dao Duc, Khanh},
  journal={Nucleic Acids Research},
  volume={51}, number={D1}, pages={D509--D516},
  year={2023},
  publisher={Oxford University Press}
}